Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs67108505 chr3:118908168 C/A 0.000143 119 45.87 35 6 KM Plot
THYM rs67166813 chr5:67021674 A/T 5.05E-8 117 44.38 41.77 12.93 KM Plot
THYM rs672107 chr12:29917266 T/A 7.02E-6 118 38.48 49.73 25.82 KM Plot
THYM rs67210936 chr15:73255633 C/T 5.33E-6 118 41.22 38.13 25.83 KM Plot
THYM rs6723023 chr2:30864006 T/C 1.38E-8 119 36.03 50.13 33.13 KM Plot
THYM rs6728144 chr2:240841599 T/C 2.23E-12 115 40.67 54.9 12.63 KM Plot
THYM rs6733037 chr2:10965208 T/G 0.000291 119 44.38 38.33 62.72 KM Plot
THYM rs6739248 chr2:30822868 C/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs67445592 chr11:16505584 G/T 8.69E-9 119 40.67 52.22 7.15 KM Plot
THYM rs67576873 chr5:67021777 C/T 5.05E-8 117 44.38 41.77 12.93 KM Plot
THYM rs67585440 chr1:210534380 A/G 0.000301 118 46.6 35 NA KM Plot
THYM rs6766503 chr3:118940383 C/T 5.55E-13 119 46.27 30.13 3.83 KM Plot
THYM rs67813435 chr6:3266153 CTTT/C 0 119 4.13 42.73 38.33 KM Plot
THYM rs67840803 chr6:163049048 C/T 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs6784200 chr3:142813109 A/G 6.07E-5 119 49.6 36.4 41.77 KM Plot